SE3520526

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6744
  • Mimulus guttatus
  • SE3520526
  • Mutator
  • M14
  • scaffold_11:23384091-23384340
  • TAAATAAAT
  • TAGGGTAAATTACAACCGCCCCCTAAAGTAATGTCTATTTACAAAAAAACCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAATAAA                    -C   AAA    T  C    T            -CTCA    CCAA            T C    TA            C        -AA      TT
        TAGGGTAAATTACAACCGCC  CCT   GTAA GT TATT ACAAAAAAACCC     GTTT    TAATTACATCTA C CCTT  AATTTGTAAATT CTTACGTT   CACCCT  
        ||||||||||||||||||||  |||   |||| || |||| ||||||||||||     ||||    |||||||||||| | ||||  |||||||||||| ||||||||   ||||||  T
        ATCCCATTTAATGTTGGTGG  GGA   CATT CA ATAA TGTTTTTTTGGG     CAAA    GTTAATGTAGGT G GGAA  TTAAACATTTAA GAATGTAA   GTGGGA  
ATAAATAA                    AA   CTC    T  C    -            AAAAA    -CTG            T A    CG            A        GTA      TG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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