SE3520527

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6745
  • Mimulus guttatus
  • SE3520527
  • Mutator
  • M3
  • scaffold_2:12851410-12851842
  • TAATAAATA
  • TAGGGTAAATTATACCCACACCCCTGAGGTATGCTAAAATAACTTTAAGGTCCCTATGGTATCGATAATTACACTCACCCCCCGAAACATAGTTAGAAACTCTAATGGGATAATGCATTGGATACATTATTCCGTTAGGGTTCTAACGAACTATTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAATAAA                CA A    -              A                A  G                      -CC                                                   TT          C         GTATCACGA     C        CAA       TGGATGATTTAAGAAATATT     A TCA
       TAGGGTAAATTATACC  C CCCC TGAGGTATGCTAAA TAACTTTAAGGTCCCT TG TATCGATAATTACACTCACCCC   GAAACATAGTTAGAAACTCTAATGGGATAATGCATTGGATACATTATTCCG  AGGGTTCTAA GAACTATTA         AGTGG GGAGACAA   AGAGTTA                    GGGGG G   
       ||||||||||||||||  | |||| |||||||||||||| |||||||||||||||| || ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||         ||||| ||||||||   |||||||                    ||||| |    
       ATCCCATTTAATGTGG  G GGGG ACTCCATACGATTT ATTGAAATTCCAGGGA AC ATAGCTATTAATGTGAGTGGGG   CTTTGTATCAATCTTTGAGATTACCCTATTACGTAACCTATGTAATAAGGC  TTTCAAGATT CTTGATAAT         TCACC CCTCTGTT   TCTCAAT                    CCCCC C   
ATAAATA                TC -    T              G                C  A                      AAA                                                   TC          A         GAAAATCGA     A        ATA       --------------------     A TGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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