SE3520528

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6746
  • Mimulus guttatus
  • SE3520528
  • Mutator
  • M5
  • scaffold_14:7197179-7197537
  • TTTAATTAA
  • TTAATTAAGGGTAAATTACGAAAATCCCCCTAAACTTAGGCTAAATAATAAAATACTCCCCCACC

Secondary structure and sequence

TSD    TIR
5'



3' 
T        -                T               C     A      TA T  C C   GATCC    CAAC     TT     ---------C    TA -----    TGATCGA   TTTAACAGAAAATGTGTACAGTCTATTATACCTGATGTTAAATAGGTGAGAAATAAAAGAAAAT
 TTAATTAA GGGTAAATTACGAAAA CCCCCTAAACTTAGG TAAAT ATAAAA  C CC C ACC     GTAA    CAAAA  CCCCT          TAAT  A     CTGT       GTT                                                                
 |||||||| |||||||||||||||| ||||||||||||||| ||||| ||||||  | || | |||     ||||    |||||  |||||          ||||  |     ||||       |||                                                                A
 AATTAATT CCCATTTAATGCTTTT GGGGGATTTGAATCT ATTTA TGTTTT  G GG G TGG     CATT    GTTTT  GGGGA          AGGC  A     TAGT       TGG                                                                
         T                -               A     A      TG T  A A   ATAAA    AATA     -T     CTCCAAACAA    -- GAATG    ------T   TCAATGTCACACTGAAAAGTGCCTAAAAAAAATAAGCCTCCTTATTTTAAATGTGTTAAAGTCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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