SE3520529

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6747
  • Mimulus guttatus
  • SE3520529
  • Mutator
  • M2
  • scaffold_12:5883983-5884341
  • TATTTTATT
  • TAGGGCAAATTACGGCCACCCCTGAGCTATGGTCAAATTACGAAAACCCCCCTCCTGTTTGGGCTATTACAGCCACCCCCTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TATTTTAT                          C                   CC      C        CT               -  -AACTAT      ATC     -    GAC    C  GAGGTAAATTTAGGGATGTTAATTCGGTAAAACCGAACCAAAATTTCGGTACGTCA
        TAGGGCAAATTACGGCCACCCCTGAG TATGGTCAAATTACGAAAA  CCCCTC TGTTTGGG  ATTACAGCCACCCCC TC       GTATTT   TTACG AAAA   CCCT AA                                                        
        |||||||||||||||||||||||||| |||||||||||||||||||  |||||| ||||||||  ||||||||||||||| ||       ||||||   ||||| ||||   |||| ||                                                         
        ATCCCGTTTAATGCCGGTGGGGACTC ATACCAGTTTAATGCTTTT  GGGGAG ACAAACCC  TAATGTCGGTGGGGG AG       TATAAA   AATGC TTTT   TACA TT                                                        
ATTATTTT                          C                   TT      A        AT               G  GAAAATT      ---     A    AAA    -  AAGCCAATAAATGGTTTGGTTTAGCATATAAATCAAGCCATTTGCCATACTTTACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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