Plant MITE

SE3550530

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6748
Mimulus guttatus
SE3550530
PIF/harbinger
To2
scaffold_6:4379861-4380101
TTA
AGGCCTCGTTTGGTTG

Secondary structure and sequence

TSD TIR

5'

3'

TT                CCAAGATA      G   A   AA         -----ATCTAATG    CCAATTGTTTTATTGGACCTTGGAAGGTCCAACCAAAAACATGCTTAAAAGGCAAGAT
  AGGCCTCGTTTGGTTG        AGATTA CCA GAT  GACTAAATA             AAAA                                                          
  ||||||||||||||||        |||||| ||| |||  |||||||||             ||||                                                           
  TCCGGGGCAAACCAAC        TCTAAT GGT CTA  TTGATTTAT             CCTA                                                          
AT                -----CCC      A   A   -A         CAACCTGAAACAA    CAAACCATAGGGGTTATTGAACGGCCCAGCTGGGCGTTTATAATACAATAGTACCGAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3550530

TTAGGCCTCGTTTGGTTGCCAAGATAAGATTAGCCAAGATAAGACTAAATAATCTAATGAAAACCAATTGTTTTATTGGACCTTGGAAGGTCCAACCAAAAACATGCTTAAAAGGCAAGATAAGCCATGATAACATAATATTTGCGGGTCGACCCGGCAAGTTATTGGGGATACCAAACATCCAACAAAGTCCAACTATTTAGTTAATCATGGATAATCTCCCCAACCAAACGGGGCCTTA

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