Plant MITE

SE3550531

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6749
Mimulus guttatus
SE3550531
PIF/harbinger
To2
scaffold_10:15749656-15749896
TTA
AGGCCTCGTTTGGTTGCCAAGAT

Secondary structure and sequence

TSD TIR

5'

3'

TT                CCA    A    -------   -    GATAAAATTAATTAATCTAATGAAACCCAATTGTATTATTAGACCTTGGAAGATCCAATAAAAAACATGCCTAAAAGGCA
  AGGCCTCGTTTGGTTG   AGAT AGAT       TAG TTAA                                                                                
  ||||||||||||||||   |||| ||||       ||| ||||                                                                                 
  TCCGGAGCAAACCAAC   TCTA ATCG       TTG TTTA                                                                                
AT                CCC    -    GTACTAA   A    TTACCCTGAAACAAACTACAAACGATATGGGTTATTTAATGGACCAGCTGGGCGTTTATAATACAATAGTACGGAATAGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3550531

TTAGGCCTCGTTTGGTTGCCAAGATAAGATTAGTTAAGATAAAATTAATTAATCTAATGAAACCCAATTGTATTATTAGACCTTGGAAGATCCAATAAAAAACATGCCTAAAAGGCAAGATAAGGCATGATAACATAATATTTGCGGGTCGACCAGGTAATTTATTGGGTATAGCAAACATCAAACAAAGTCCCATTATTTAGTTAATCATGGCTAATCTCCCCAACCAAACGAGGCCTTA

Copy Cancel