SE3520532

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6750
  • Mimulus guttatus
  • SE3520532
  • Mutator
  • M24
  • scaffold_11:20077836-20078038
  • TTTGAAAGA
  • AAGGGTAAATAACACTTAGCCCCCTTTGGTTTGAGTTTTATGCACATGACCCCATGTACTTTTAATATGATCATGCTTATTAGGAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTGAAAG           A      G      T         -    A             -     C     -------        ----      A       GG
        AAGGGTAAATA CACTTA CCCCCT TGGTTTGAG TTTT TGCACATGACCCC ATGTA TTTTA       ATATGATC    ATGCTT TTAGGAG  
        ||||||||||| |||||| |||||| ||||||||| |||| ||||||||||||| ||||| |||||       ||||||||    |||||| |||||||   
        TTCCCATTTAT GTGAAT GGGGGA ACCAAACTT AAAA ACGTGTATTGGGG TACAT AAAGT       TGTATTGG    TATGAA AGTTTTT  
TAAGAAAG           C      -      T         G    C             G     A     TATATCG        GGAA      -       AA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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