SE3520534

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6752
  • Mimulus guttatus
  • SE3520534
  • Mutator
  • M14
  • scaffold_7:17529872-17530121
  • TATTCTAAA
  • AGGATAAATTACAACCACCTCCCTGAGATAAAGTGTAATTACAAAAAACTCCCTTTCTTTTTTGAGAAATTACAACCAAGCCCCTGCAGTTTGTA

Secondary structure and sequence

TSD    TIR
5'



3'
TATTCTAA   A           C   TC      A   A  G  A    -      -CTC     C      G GA      AA  AA       C        AAAT    -     CC  CC   AC
        AGG TAAATTACAAC ACC  CCTGAG TAA GT TA TTAC AAAAAA    CCTTT TTTTTT A  AATTAC  CC  GCCCCTG AGTTTGTA    TTCT TACAT  GC  CCT  
        ||| ||||||||||| |||  |||||| ||| || || |||| ||||||    ||||| |||||| |  ||||||  ||  ||||||| ||||||||    |||| |||||  ||  |||  A
        TCC ATTTAATGTTG TGG  GGACTC ATT CA AT AATG TTTTTT    GGAAA AAAAGG T  TTAATG  GG  TGGGGAC TTAAACAT    AAGA ATGTA  TG  GGA  
AAATCTTA   C           -   --      G   C  A  A    C      TTTT     T      G -A      AA  --       T        --CT    T     AT  TT   AA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End