SE3550535

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6753
  • Mimulus guttatus
  • SE3550535
  • PIF/harbinger
  • To2
  • scaffold_11:3355314-3355555
  • TAA
  • AGGCCCCGTTTGGTTGCCAAGATA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                C       AACCA      A    -   --      CT          TTTGGTAT     ATAAA   C    TCGACCCGCCAAAATTATATAATCATGGCTTATCTTGC
  AGGCCCCGTTTGGTTG CAAGATA     AGATTA CTAA ATA  GTTGGA  TAATTTGATG        CCCCA     TTG CGGG                                      
  |||||||||||||||| |||||||     |||||| |||| |||  ||||||  ||||||||||        |||||     ||| ||||                                       
  TCCGGGGCAAACCAAC GTTCTAT     TCTAAT GGTT TAT  TAATTT  ATTAGATTAC        GGGGT     AAA ATAA                                      
AA                C       -----      C    C   TC      --          -----TTT     --AAT   -    CCTCGAACGTTGCAGGTTGTTTTTTTTGAGTAATCTTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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