SE3520536

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6754
  • Mimulus guttatus
  • SE3520536
  • Mutator
  • M8
  • scaffold_6:15319458-15319925
  • ATTAATTAT
  • TAATTATTGGGTAAATTAAAAC

Secondary structure and sequence

TSD    TIR
5'



3'
AT      T           A   AATT    --      ATG         CA       CA  CT                 CC    A        A   C  C             G CACT  GT           G             ATA      A     AAT      CC      ATCCCAT     C    AA      -----A    GA    -    ATAT  GTTT
  TAATTA TGGGTAAATTA AAC    CGCT  TGAGGT   GTCAAATTA  AAAAAAT  TT  TATTTGGGTAATTATAA  ACCC TCAACTAT AAT TT TTACACGTCCACT T    GT  CAAATTTAGCG AATCTTCTAGGTT   TGGAAT TTCTC   TTTGTA  CGTTTT       TTGAG TCCA  TTTTGA      GCAA  TGAT CATA    GT    
  |||||| ||||||||||| |||    ||||  ||||||   |||||||||  |||||||  ||  |||||||||||||||||  |||| |||||||| ||| || ||||||||||||| |    ||  ||||||||||| |||||||||||||   |||||| |||||   ||||||  ||||||       ||||| ||||  ||||||      ||||  |||| ||||    ||     
  ATTAAT ACCCATTTAAT TTG    GTGG  ACTCCG   TAGTTTAAT  TTTTTTG  AA  ATAAACTTATTAATATT  TGGG AGTTGATA TTA AA AATGTGCAGGTGG A    CA  GTTTAAGTTGT TTAGAAGATCTAA   ACTTTA AAGAG   AAACAT  GCAAAA       GATTT AGGT  AAGACT      TGTT  ACTA GTAT    CG    
TT      T           G   --GT    AG      ---         AC       AG  AT                 AA    G        C   A  A             G ATAC  AT           A             AGC      C     ATC      AA      ----CAC     T    CA      AAGTGG    AG    T    -GTT  GTTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End