SE3520537

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6755
  • Mimulus guttatus
  • SE3520537
  • Mutator
  • M5
  • scaffold_5:17491814-17492205
  • TTAATTAAA
  • TTAATTAAAGGGTAAATTACGAAAACCCCCCTGAAAACTTAGGCTAAATAACGAAAAAACACCCCCACCTATCCGTAATAACCAAAATCCCCCTCTGGTTAACTGTTGATCG

Secondary structure and sequence

TSD    TIR
5'



3'
         A           G       C     AA      G              -A  A       C   CC     A       T      CTG   AAC    GA   ----A     GTAATAGAAAATGTGCACAATCTATTATACCTTCTGTTAAATAGGTGAGAAATAAAAGAAAATATCTGAAATTGTGTAA
 TTAATTAA GGGTAAATTAC AAAACCC CCTGA  ACTTAG CTAAATAACGAAAA  AC CCCCCAC TAT  GTAAT ACCAAAA CCCCCT   GTT   TGTT  TCG     GTTTT                                                                               
 |||||||| ||||||||||| ||||||| |||||  |||||| ||||||||||||||  || ||||||| |||  ||||| ||||||| ||||||   |||   ||||  |||     |||||                                                                               A
 AATTAATT CCCATTTAATG TTTTGGG GGACT  TGAATC GATTTATTGCTTTT  TG GGGGGTG ATA  CATTA TGGTTTT GGGGGA   CAA   ACAA  GGC     TTGTG                                                                               
A        -           -       C     --      A              CG  -       T   AA     A       T      CTA   ---    -A   AGAGA     GTTTGGTACAAAGGTAGAATGTGGTTGGGGGAATGTCGCACTAAAAAGTGCCTAAAAAAAAAACAAGATCCTTTATCTG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End