SE3530538

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6756
  • Mimulus guttatus
  • SE3530538
  • hAT
  • Hat1
  • scaffold_8:23735109-23735557
  • TACTCGAC
  • TCGACCTATGTAGCGCGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAC    --C              --   TTCAACTTGTTAACGTGTGCGCGTTTCGGACACGTTTCGTGTCCGACGCTCGAGGACACCGGACGGACACCATATGAACCATTTTGCAATTTTTGAAAAGTTAGAAACATGTTTGAGTAACAAATTTCCAAATATTTTTGTTGTTTCCCTAATTATTTACATGATTTAATGATCAATTGCAAATTAATACTTGATAAT
   TCGA   CTATGTAGCGCGGA  AAC                                                                                                                                                                                                      
   ||||   ||||||||||||||  |||                                                                                                                                                                                                      G
   AGCT   GATACATCGTGCCT  GCC                                                                                                                                                                                                      
  C    CAT              GT   TTTGCCGCTATGCCCCTTTGTATGTGCCTTTTAGCCGTACAGGGGTTTTAATCTTATGCCCTTGAAACCCCCTTTTCACATTTATAATTTTTATATCCACATATGAACATTTATACGATATATTTGTGCATATTCAATATATATATATATATATATATATATATATATAAAGGCATGTTTATATAAATTTTATTTATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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