SE3520542

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6760
  • Mimulus guttatus
  • SE3520542
  • Mutator
  • M9
  • scaffold_3:11823463-11823768
  • ATAAAATCA
  • GGGAAAAATACAGTTTTCATCACTCAAGTTTGCATCTATTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
ATAAAATCAA       A         C   A     G       CT     ACA - TGGTCCTCCATGTTTCAAAAATTCAACATTTTTAGTCCATTTTGTCAATTTTCCGTAAAAACTAACGGAATCAAGTGTGTGCCCATCATTGCCTTAA
          GGGAAAA TACAGTTTT ATC CTCAA TTTGCAT  ATTTC   T T                                                                                                 
          ||||||| ||||||||| ||| ||||| |||||||  |||||   | |                                                                                                 C
          CCCTTTT ATGTCAAAA TAG GAGTT AAACGTG  TAAAG   C C                                                                                                 
AACTAAAATA       A         A   G     -       AC     --- G ACACTGGGGAATACAAGTGTTTTTTGTATAAACCAGGGAGTACAAAGTTATTAAATTGTCAAAACCAGTAAAAGCAGTCGAATTATAATCAGACAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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