SE3520543

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6761
  • Mimulus guttatus
  • SE3520543
  • Mutator
  • M2
  • scaffold_14:5359745-5360014
  • TAAATTTAA
  • TAAATTTAAGGGCAAATTACGGCCACCCCATGAGGTAAGGTCAGATTACGAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
         A             C      A                       AAACA       G  --                     CCTC          TAT         AAAAAAC        CA  A   AAAT
 TAAATTTA GGGCAAATTACGG CACCCC TGAGGTAAGGTCAGATTACGAAA     CCCTCTT TT  TGGGTAATTACAACCACCCCC    AACTATGTAT   TGTCTTACG       CCATCCTT  GT GGT    
 |||||||| ||||||||||||| |||||| |||||||||||||||||||||||     ||||||| ||  |||||||||||||||||||||    ||||||||||   |||||||||       ||||||||  || |||    T
 ATTTAAAT CCCGTTTAATGCC GTGGGG ACTCCGTTTCAGTTTAATGCTTT     GGGGGAA AG  ACCCATTAATGTTGGTGGGGG    TTGATACATA   ACAGAATGT       GGTGGGAA  CA CCG    
A        -             T      A                       ---GG       G  AA                     ----          ---         ----GCA        --  -   CAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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