SE3540545

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6763
  • Mimulus guttatus
  • SE3540545
  • CACTA
  • Ca1
  • scaffold_11:16078954-16079246
  • AAT
  • TCACTAGTAAAAAAATTGCTTTTTACTATGA

Secondary structure and sequence

TSD    TIR
5'



3' 
AA         A                     -ATTTG   CTACGGTAAAAAGCCGTAACAAAAGATACTTTAAATTACGGGACAATATTGGAGTCGTAGTAAATGCTAGGATTTACCGTATCAAATAAGTAGTTGCTACGGCCA
  TCACTAGTA AAAAATTGCTTTTTACTATGA      TTG                                                                                                         
  ||||||||| |||||||||||||||||||||      |||                                                                                                          
  AGTGATCAT TTTTTAATGAAAAATGATGCT      TGG                                                                                                         
TA         C                     GGTAAT   TATCATTTTCCATAGTTTAAGCATCATTGTTATGAAAACGATGCGTATACGATGTTAAAACGGGGCATCATATATGCCCGCACTATTTTTGAAACGATGCCATTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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