SE3550546

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6764
  • Mimulus guttatus
  • SE3550546
  • PIF/harbinger
  • To5
  • scaffold_4:2935386-2935778
  • TAA
  • AGGCAATGTTTGGAAGTGTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA    A          G      GG     ATT    - TTCATTTTGAGAAAATATGTTTTGGGGGAATAATTTGAGAATGAAAGTAATGTTTGTTTGTATTTTGGAAGGAGACAAAATACACTGTAGTAGTCAAATCATGTTTAAAGGTGTTAGAAAGAAGTATTTTTGAAGAAAAAAATTGAAAGATGAAGTGA
  AGGC ATGTTTGGAA TGTTTT  ATCTT   TTGA T                                                                                                                                                              
  |||| |||||||||| ||||||  |||||   |||| |                                                                                                                                                              T
  TCCG TACAAACCTT GTAAAA  AAAAC   AAAA T                                                                                                                                                              
AA    A          G      AC     ---    G AACAAAAGGGTTTTGTTTTACTCTAAATAATGTGAAAAGTATAGTAAAAGAGTTTTGTTAAAGTTTTCAAAGAGAGAGGAAGTCTGTACTACACTGACGATGTCATTTTACTAAACTGAAGATGTCATTTTTTACAGAAGTGATTTTTTGTTTATTTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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