Plant MITE

SE3510547

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6765
Mimulus guttatus
SE3510547
Tc1/Mariner
St4
scaffold_7:6055315-6055591
TA
TACTCCCTCTGTTCC

Secondary structure and sequence

TSD TIR

5'

3'

             -  ACAATAACC    CTTT    -  ----   TTTTTGTTCCATATTATCTGTAACTTTAGATTTCCAATACTGCATTAAATGCATTTTTTCCTGTTTTAACCTTATTAATTCAATTATAAGTATTAACTCTC
TACTCCCTCTGTT CC         GTCT    TTTT AA    ATA                                                                                                     
||||||||||||| ||         ||||    |||| ||    |||                                                                                                      
ATGAGGGAGGCAA GG         ATAA    TTCA AG    AAC                                                                                                     
             A  ---------    ----    C  TAAA   CGAAACGTGTTCCTAATTCTTTGAGTTATTTACACAGAACTAAAATCCATTTTATATAATCTTTCTGATTTTATTGGAACTAACAAATTTTACCCTATTCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3510547

TACTCCCTCTGTTCCACAATAACCGTCTCTTTTTTTAAATATTTTTGTTCCATATTATCTGTAACTTTAGATTTCCAATACTGCATTAAATGCATTTTTTCCTGTTTTAACCTTATTAATTCAATTATAAGTATTAACTCTCTCTTATCCCATTTTAAACAATCAAGGTTATTTTAGTCTTTCTAATATATTTTACCTAAAATCAAGACACATTTATTGAGTTTCTTAATCCTTGTGCAAAGCCAAAAATGACACTTAATAGGAAACGGAGGGAGTA

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