SE3520548

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6766
  • Mimulus guttatus
  • SE3520548
  • Mutator
  • M19
  • scaffold_8:14118787-14119533
  • TATGTACAA
  • TGTACAAGGCTTAATTCCACTTTGCACCCTTGAAATATACCATTTTGGCACTTTGCACCCTCGAAA

Secondary structure and sequence

TSD    TIR
5'



3'
TA      -                                                            AATAA                    A   C            T  C         T   T   ATAATA     AA         TCATTGGTGTTTTTCTTTTTGGGGTACAAAAAAAAAATTGTTGTTTTCTTGAACCTCAAACCTAATTTCGAGCGGACAAAGTGCGAAAAAATAAAAATTACACCGGATTATTAAAAAAAAACTACATTATCTTACAAAAGAAAAATAAAAAAAATAATCTTTTATCACTAAATTATTCGATTGTGGATCTTTTATGTCACTGTTTGTAAAATATTAGGTGA
  TGTACA AGGCTTAATTCCACTTTGCACCCTTGAAATATACCATTTTGGCACTTTGCACCCTCGAAA     TAATAGCACTTTGCACCCTC AAA ACAATAAATCAT CA AATGCACCC CAA TGA      AAGGC  TTTTATTTT                                                                                                                                                                                                                             
  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||| ||| |||||||||||| || ||||||||| ||| |||      |||||  |||||||||                                                                                                                                                                                                                             A
  ACATGT TCCGAATTAAGGTGAAACGTGGGAACTTTATATGGTAAAACCGTGAAACGTGGGAGCTTT     ATTATCGTGAAACGTGGGAG TTT TGTTATTTAGTA GT TTACGTGGG GTT ACT      TTTCG  TTTTTTATA                                                                                                                                                                                                                             
 A      A                                                            ATTTA                    C   A            C  A         -   T   AAAAAA     -A         TTTAAATTATAAACATCACTATAAAAAAATCCTACGGTTTACAGTTTATAAAAAAAATAAGTAGTTAGTAAAACTTTGATATTTCAAGTTTTTATTTTTATGTAAGGTAGTTGTATAAATTTTTAATATAACAAAATAGTTTTATTTTATAAAATGCTTTTTTTTAGTAAGTCGATAATGCAATAGTTCAATAGACTTTTAATAAAAAAGAAGGTTTATAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End