SE3530552

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6770
  • Mimulus guttatus
  • SE3530552
  • hAT
  • Hat25
  • scaffold_14:3434633-3435382
  • CTTGTCTT
  • TAGGGTTGTTCATGGGTCGG

Secondary structure and sequence

TSD    TIR
5'



3' 
CTTGTCTT                    ----------TTTT      CAACCGACCCATTATCTGCCCGACTATTCTGGCCGATAATTGCCCACCAACCGACCCGTTTTGGTCGGGCCGATAATTTTAACCGACCCATGCATGGTTGGGTCGGGTATAGTTTCTAATTTGTTGAAAAGTCGGTTGGCCGATATTACCCGACCAACCGACTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAAAAAATTCTCTTTATGTTTTTACCGACTATTAGTTTCAATATTTAATTTTTGACCTTTCGGTAAATGAATAAAAATACACAACTAAAAAAACTATACTCTTCATTTTCTCAAATTAAAATTAAAAGTTTCATAATTTT
        TAGGGTTGTTCATGGGTCGG              ACCCGA                                                                                                                                                                                                                                                                                                                                            
        ||||||||||||||||||||              ||||||                                                                                                                                                                                                                                                                                                                                             
        ATCCCAACAAGTACCCAGCC              CCGGCT                                                                                                                                                                                                                                                                                                                                            
TTCTGTTC                    CAGCCAACTAATAG      AATAGCCGGGCTGGGCTGGTTGGCTGAGAATGTTTATACATTTTGGTAATAGCCGGGCTGATAACACTCAGCCCATTACCAACCGTTGGCTGAAACAGCCAACGGTTTTGCCCAGCCAACTTTAATAGCCGGTTATAGCCGGTGTAATTAATTTTATTTTTTATTTTTTATTTTTTTTTAATACGATAATGAGATAGTTTTAAGTTGTTGTTTGTAAGGTTATAAAGTACGGGTTTTAGTTAAAGTTGCTATAGTGTACAATGTTTAATTTAAAAGTTTTTGTTATATTTTTGATTTTGCTTAGTGAAATCGGTAAGTGTGAAAGTGTTGTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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