SE3550556

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6774
  • Mimulus guttatus
  • SE3550556
  • PIF/harbinger
  • To2
  • scaffold_11:3355314-3355555
  • TTA
  • AGGCCCCGTTTGGTTGGCAAGATAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                G        GATTA        AA         ------------------A    ATGAAACCCCATTATTTTATTGGAGCTTGCAACGTCCAACAAAAAAAACTCATTAGAAG
  AGGCCCCGTTTGGTTG CAAGATAA     GCCAAGAT  GATTAAATA                   TCTA                                                           
  |||||||||||||||| ||||||||     ||||||||  |||||||||                   ||||                                                            
  TCCGGGGCAAACCAAC GTTCTATT     TGGTTCTA  TTGATTTAT                   AACC                                                           
AT                G        -----        -A         CAACCTGAATTAAACTACA    ATAGGGGTTATTTAACGGCCCAGCTGGGCGGTTTTAATATATTAGTACCGAATAGAACG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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