Plant MITE

SE3530558

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6776
Mimulus guttatus
SE3530558
hAT
Hat22
scaffold_10:7762154-7762742
ATTTTTAT
ATCAATGTTGTTAGAACCGGACCG

Secondary structure and sequence

TSD TIR

5'

3'

ATTTTT           T    C       AACCGA          --  G    ACCGTAACCCAGCGTTGAAGCGGTCCGGTCTAACCTCTAAAACAGGAAAAACTAAGAACCGGGGTCAAATGACCAAAATTCGGTTCGACCGGGTAACACCGGAGAACCGACGAGTCTGTCAAGGAACCCGTTTCTCGGCCAAAACGTCTCAAACCACCGCTGAGTTTGTTATTTTTTACTAGGTTTGAGCAAACCTTCACAGACTTAGTCGTAGATGGCCGGATCTAGTCATGAATGGTCGAA
      ATCAATGTTGT AGAA CGGACCG      CCGGTCGGAC  CG TTCG                                                                                                                                                                                                                                                   
      ||||||||||| |||| |||||||      ||||||||||  || ||||                                                                                                                                                                                                                                                   T
      TAGTTACAACA TCTT GCCTGGC      GATATTTTGG  TG TTGG                                                                                                                                                                                                                                                   
TATTTT           T    A       -----C          CT  -    TAAACCCAGTACCAAAATGTTCCGGTCCAAAATTATACAATAATAAAATAATTAAAATTATAAAATTTTTATGATAAAAGAAATATCAAAATTAAAGGGTGGATAATAAAAGTAAAAATAGATGTAGTGGGCTGAATAATGATATAAAGAAAACGAATATGAGATATAAAAAGGTAAGAAATAAGAGGCTTTAGGCTGTTAGCGAGTGGGGATAAGCTAGTGGGTACTGGTATAGTCCGTTAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3530558

ATTTTTATCAATGTTGTTAGAACCGGACCGAACCGACCGGTCGGACCGGTTCGACCGTAACCCAGCGTTGAAGCGGTCCGGTCTAACCTCTAAAACAGGAAAAACTAAGAACCGGGGTCAAATGACCAAAATTCGGTTCGACCGGGTAACACCGGAGAACCGACGAGTCTGTCAAGGAACCCGTTTCTCGGCCAAAACGTCTCAAACCACCGCTGAGTTTGTTATTTTTTACTAGGTTTGAGCAAACCTTCACAGACTTAGTCGTAGATGGCCGGATCTAGTCATGAATGGTCGAATGATTGCCTGATATGGTCATGGGTGATCGAATAGGGGTGAGCGATTGTCGGATTTCGGAGAATAAAGAATGGAAAAATATAGAGTATAAGCAAAAGAAATATAGTAATAAGTCGGGTGATGTAGATAAAAATGAAAATAATAGGTGGGAAATTAAAACTATAAAGAAAATAGTATTTTTAAAATATTAAAATTAATAAAATAATAACATATTAAAACCTGGCCTTGTAAAACCATGACCCAAATGGTTGTTCGGTTTTATAGCCGGTCCGATTCTTACAACATTGATTTTTAT

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