SE3520559

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6777
  • Mimulus guttatus
  • SE3520559
  • Mutator
  • M15
  • scaffold_8:19742996-19743388
  • TTAAAATTA
  • AGGGTAAATAACACTCAACCCCCTGTCCTGTGATTACAACATTTTGCAGATGACACTCTTGTGGTCTTAATATCAGCACATAATTAACCCCCTTGTGATTTAGGGGGGTTAGCTTCCGTTAATTTTTCCGTCAAACTTAATCGCATGTGTCAAATGTCAA

Secondary structure and sequence

TSD    TIR
5'



3'
TTAAAATT               C  C     GTC     A      CA             A        G CT                 TAA CCC      A         GT            A     C                  G        G    AGTATTTT    -GC      -CCCCCTT   CT
        AGGGTAAATAACACT AA CCCCT   CTGTG TTACAA  TTTTGCAGATGAC CTCTTGTG T  TAATATCAGCACATAAT   C   CTTGTG TTTAGGGGG  TAGCTTCCGTTA TTTTT CGTCAAACTTAATCGCAT TGTCAAAT TCAA        TTTG   AGATGA        GTG  
        ||||||||||||||| || |||||   ||||| ||||||  ||||||||||||| |||||||| |  |||||||||||||||||   |   |||||| |||||||||  |||||||||||| ||||| |||||||||||||||||| |||||||| ||||        ||||   ||||||        |||   
        TCCCATTTATTGTGA TT GGGGA   GACAC AATGTT  AAAACGTCTACTG GGGAACAT A  ATTATAGTCGTGTATTG   G   GAACAC AAATCCCCC  ATCGAAGGCAAT AAAAA GCAGTTTGAATTGGCGTA GCAGTTTG AGTT        AGAC   TTTACT        TAC  
ATTAAAAT               A  T     ---     C      CG             A        G TC                 --C --A      C         --            C     A                  A        A    CTCCCAGT    GTT      TTCCCTTT   AT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End