SE3520560

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6778
  • Mimulus guttatus
  • SE3520560
  • Mutator
  • M8
  • scaffold_6:13944225-13944675
  • TAATTTGCT
  • TGGGGTAAATTACAACCACCCCTGAGGTATGGTCAATTTACGAAAAAACCCCTCTTGTTTGGATAGTTACATATAACCCCCTCAACTATGATTTTTTTCTTACACCTCCACCCTTATGGTGTCAAATT

Secondary structure and sequence

TSD    TIR
5'



3'
TAATTTGC                    --                T         AA    -  T       A        TA AA               TTT           C         A    G       CAACAT    A  T     TC         GC  TA                 G AAAAATACAGT   TAAT  A     GTC   TA  T  T
        TGGGGTAAATTACAACCACC  CCTGAGGTATGGTCAA TTACGAAAA  CCCC TC TGTTTGG TAGTTACA  T  CCCCCTCAACTATGA   TTTTCTTACAC TCCACCCTT TGGT TCAAATT      AATC TC AGATT  GTGGAATGT  TC  TTTTGTACTCGTTTTGT T           TTC    GC CCACA   TGA  TA GA 
        ||||||||||||||||||||  |||||||||||||||| |||||||||  |||| || ||||||| ||||||||  |  |||||||||||||||   ||||||||||| ||||||||| |||| |||||||      |||| || |||||  |||||||||  ||  ||||||||||||||||| |           |||    || |||||   |||  || || C
        ATCCCATTTAATGTTGGTGG  GGACTCCATACCAGTT AATGCTTTT  GGGG AG ACAAACC ATTAATGT  G  GGGGGAGTTGATATT   AGAAGAATGTG AGGTGGGAA GCCA AGTTTAA      TTAG AG TCTAA  TACCTTATA  AG  AAAACATGGGCGAAATA G           AAG    TG GGTGT   ACT  GT CT 
 TCGTTTA                    AG                T         -G    T  T       C        TG TG               --T           T         C    A       ATCACC    A  C     TA         AT  TG                 G ---------GT   --CT  A     AAA   TC  T  A

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End