SE3520561

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6779
  • Mimulus guttatus
  • SE3520561
  • Mutator
  • M26
  • scaffold_3:12394393-12394644
  • AATATATAT
  • ATATATATGGGGACGCCTAAAAAAAATACCGTTTATTTCTAACTTCACCAACATAAAAATAGAAAATAAATAGGTAACGACATTAATACCCTTAATAAAATCAATACCACACAATTTTTGTGTGGTATTGATTTTCATAAAGGGTAATAATGTCATTACCTATTTATTATCTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
A        G    -  C      A                 A     ---    ---        ------------     A             C       A       A  -                  T
 ATATATAT GGGA CG CTAAAA AAATACCGTTTATTTCT ACTTC   ACCA   ACATAAAA            ATAGA AATAAATAGGTAA GACATTA TACCCTT AT AAAATCAATACCACACAA 
 |||||||| |||| || |||||| ||||||||||||||||| |||||   ||||   ||||||||            ||||| ||||||||||||| ||||||| ||||||| || |||||||||||||||||| T
 TATATATA CCCT GC GATTTT TTTATGGCAAATAAAGA TGAAG   TGGT   TGTATTTT            TATCT TTATTTATCCATT CTGTAAT ATGGGAA TA TTTTAGTTATGGTGTGTT 
         A    C  C      G                 G     TTA    GCT        TTATTTTTTATT     A             A       A       A  C                  T
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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