SE3520562

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6780
  • Mimulus guttatus
  • SE3520562
  • Mutator
  • M5
  • scaffold_4:5576623-5576979
  • TAACTATAA
  • AGGGTAAATTATGGAAACCCTCTGAACTTTGGCTAAATAACGAAAAACACCTCCACCTATTCGTAATTACTAGAAAAACTCTGAGGTTTGTTTCGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAACTATA             G     C         T  C              C       C           T       --AAA      -GGT     --    --C      GAACCCCCTTACAGTGTAACTTTTCGCGATTTTTTTTTATTCCATGGAATAGATTTTACACAAT
        AGGGTAAATTATG AAACC TCTGAACTT GG TAAATAACGAAAAA ACCTCCA CTATTCGTAAT ACTAGAA     CTCTGA    TTGTT  TCGT   TTACAC                                                                
        ||||||||||||| ||||| ||||||||| || |||||||||||||| ||||||| ||||||||||| |||||||     ||||||    |||||  ||||   ||||||                                                                T
        TCCCATTTAATAC TTTGG AGGTTTGAA CC ATTTATTGCTTTTT TGGGGGT GATAGGCATTA TGATTTT     GAGACT    GACAA  AGCA   AAATTG                                                                
AATATCAA             -     T         T  T              A       A           T       AGGGA      AATT     CT    AAA      TCTTTTACACATGTCAGATAATATTGAAGACAATTTATCCACTCTTTATTTTCTTTTATAGACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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