SE3530563

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6781
  • Mimulus guttatus
  • SE3530563
  • hAT
  • Hat29
  • scaffold_6:15674388-15674934
  • ATTATAAT
  • ATTATAATCTATGCTGCACGGACAC

Secondary structure and sequence

TSD    TIR
5'



3' 
                         ---G   ----  G  GACACGGCGATACGCGGATACGGACACAGTGATACGGCATTTCCAAAAAACTAGGATACGGACACGCGAGGATACGCGTAAATATAAAAAATATAGGGGTATATTTATAAATAATAAAAATATAGGGGTACATTTATAAATTGTAAAAAATATGTATAGGTCGTCATCGCATAAGAGAACCGCTCGCCCTTGTTGCTCGTGTTCTTGGTCGCCGTCGCATGCTAGACTTCTGGAGT
ATTATAATCTATGCTGCACGGACAC    GAT    AC TG                                                                                                                                                                                                                                            
|||||||||||||||||||||||||    |||    || ||                                                                                                                                                                                                                                            T
TAATATTAGATACGACGTGCCTGTG    TCT    CT TC                                                                                                                                                                                                                                            
                         AAGA   TCCA  -  TCAGAGGCATAGGCTGTGGACCTGTGAGCCTGTGTGAGCCTATGAAGAGCCTGTGGGCACAGCCCGGCATAGCATTAAAGCGATTTTCATCCTGTGGGCACAGCCCGTCACAGGTGTTAAAATTTTTTCAACTCTGTGAAGAGAATGTAAAATTCTCTATCGGGATTATTTTTTTTACGCGTAAAAGAAACGAGACATCATGTGTAAAGGAGACAAAAGAAACACTCATGTGAGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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