SE3530565

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6783
  • Mimulus guttatus
  • SE3530565
  • hAT
  • Hat1
  • scaffold_12:17633010-17633716
  • TTTCTCAC
  • TAGGGATGGCAATGGGTACGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTCTCAC             G   A   GTTTGGC      T       GAA   ACTCGTTTGGGGCGGGTTTGGGTCAGCTAAATGGTTCTGGGTCGGGTAATGGGTTTAAGTTTCTAGAACCGGATGGTTCTGGGTCGGGTTACGGGTCTTATCGGAACCGACCCAGACCCGACCCGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATCAAACTATCAATTTCCATTTTGTTTATTCTCATTTACCGATTTTCACTGTTTTATTTTTCGAATCCCATTTCTCGTGAGTAATATTTATCGCTAATTGTCTTGCATTTTGAAT
        TAGGGATGGCAAT GGT CGG       GGGCCT GGACCCG   CCG                                                                                                                                                                                                                                                                                                               
        ||||||||||||| ||| |||       |||||| |||||||   |||                                                                                                                                                                                                                                                                                                               T
        ATCCCTACCGTTG CCA GCC       AAGACC CGGCCCA   AAC                                                                                                                                                                                                                                                                                                               
CACTCTTT             A   -   -------      -       ---   GGATTTGGGTTCTGGGCTGGGTGCTTTTTATATATTTGGGTTCTGGGCGGGGTTGGGCGAAAACGAATCTGGGTCTGGGCGGGGTTGGGTCTGGGATTGATTTGCCAAGACTGGGCGGTCTGGGCTATCTGGGTAATTGTATGTTTTTCAAATTATAAAAAAAATTGAAAGTATTGTAAAACGAACATATAAAAATACTTTATTAGAGTTATGATTTTATGTTATAAAATTTTTTAGAGATGTTCACTATATTGTACTTGTTATTTTAATGTTAAATAATATAAATTGAAGCTATTATTCATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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