SE3520566

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6784
  • Mimulus guttatus
  • SE3520566
  • Mutator
  • M3
  • scaffold_10:10204681-10205122
  • TAAATTTAA
  • TAAATTTAAGGGTAAATTACACCCACACCCCTGAGGTATGCTTAAATAACTTTAAGGTCCTTGTGGTATCGATAATTACACTCACCCCCTTGAAACGTAGTTATAAACTCTAATGAGATAATGCATTGGATAAGTTATTACGATAGAGTTCTAACAGACTATTGGTTTCAG

Secondary structure and sequence

TSD    TIR
5'



3'
         A                                        C                                C       T                        A            GA  A     TA      A       CA        G   C  GAAA    G    C    A           T  T   AGAAATATTG     CCA
 TAAATTTA GGGTAAATTACACCCACACCCCTGAGGTATGCTTAAATAA TTTAAGGTCCTTGTGGTATCGATAATTACACT ACCCCCT GAAACGTAGTTATAAACTCTAATG GATAATGCATTG  TA GTTAT  CGATAG GTTCTAA  GACTATTG TTT AG    TGGT GAGA AACA AGAGTTATGGG GA TTA          GGGAT   
 |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||  || |||||  |||||| |||||||  |||||||| ||| ||    |||| |||| |||| ||||||||||| || |||          |||||   T
 ATTTAAAT CCCATTTAATGTGGGTGTGGGGACTCCATACGAATTTATT AAATTCCAGGGATACCATAGCTATTAATGTGA TGGGGGA CTTTGCATCAATATTTGAGATTAC CTATTACGTAAC  AT TAATA  GCTATC TAAGATT  CTGATAAT AAA TC    ACCA CTCT TTGT TCTCAATACCC CT AAT          CCCTA   
A        -                                        A                                C       -                        C            AT  G     AG      C       AC        G   A  GATC    A    A    A           -  C   ---------A     CCG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End