SE3530567

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6785
  • Mimulus guttatus
  • SE3530567
  • hAT
  • Hat27
  • scaffold_5:1389133-1389355
  • ATGCGTAT
  • ATGCGTATCAGAGCCGGTCCTGAGGG

Secondary structure and sequence

TSD    TIR
5'



3' 
                     G    GAAG  --A   ATGCCATCGCTTAGGGCCCCATTTTAATCTAGGCCCCCAAAATTAAACAAATGAAAGCCTAATATATATAGAGAT
ATGCGTATCAGAGCCGGTCCT AGGG    CC   GAG                                                                           
||||||||||||||||||||| ||||    ||   |||                                                                           A
TATGCGTAGTCTCGGCCGGGA TCCC    GG   CGG                                                                           
                     -    -AAA  CCC   AATCCGCTCTAATTATTAGCTCCGGGGCTAGAATATTTAAAAACGAACGTTATAAGAAAAGATAATTAAAAAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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