SE3540568

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6786
  • Mimulus guttatus
  • SE3540568
  • CACTA
  • Ca1
  • scaffold_8:23125256-23125521
  • ACA
  • CACTAGTAGAAAAATGGCTTTTTACTACGA

Secondary structure and sequence

TSD    TIR
5'



3' 
ACA     G       ----  -G    T         TTATTA      -  AAAAT    CAAATTCGTACTAAAAAAGCTTTTGCTACGCATTTGCTACGAATTTGCCCCGTAGCATATACGGGCGTGACAAAAG
   CACTA TAGAAAA    AT  GCTT TTACTACGA      ACCGTA GC     GTAT                                                                            
   ||||| |||||||    ||  |||| |||||||||      |||||| ||     ||||                                                                            C
   GTGAT ATCTTTT    TA  CGAA AATGATGCT      AACGAT TC     ATTT                                                                            
ACA     A       AATT  AA    T         TTAAAA      T  -----    TTTGGCATTATTTTCCATGAAAAATGATACATTGTTAAAACTTCAGCATCATTTATGATCCTAAATGGCATCGTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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