SE3520569

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6787
  • Mimulus guttatus
  • SE3520569
  • Mutator
  • M8
  • scaffold_14:7411592-7412031
  • ATAAATAAA
  • GGGTAAATTACAACCAACCCCTTGAGGTATGGTCAATTTACGAAAAACCTCTCTTGTTTGGATAATTACATCGACTCCTTCAACTATGATTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
ATAAATAAA                A  -                 T         -A      T       A        T G  T             TT   --TTCTT  -   TCCACTCTTATGGTGTCAAATTCGACATACTCATCTGGATTTCGTGGATTGTGCTCTAGTTTGTACTTGTTTTGTGTAAAAATACAGTTTCTGATGCATCACAAT
         GGGTAAATTACAACCA CC CCTTGAGGTATGGTCAA TTACGAAAA  CCTCTC TGTTTGG TAATTACA C AC CCTTCAACTATGA  TTT       AC ACC                                                                                                         
         |||||||||||||||| || ||||||||||||||||| |||||||||  |||||| ||||||| |||||||| | || |||||||||||||  |||       || |||                                                                                                         T
         CCCATTTAATGTTGGT GG GGGACTCCATACCAGTT AATGTTTTT  GGGGAG ACAAACC ATTAATGT G TG GGGAGTTGATATT  AAA       AG AGA                                                                                                         
AAATAAATA                -  A                 T         AG      T       C        T A  -             TT   TCACCTT  A   TCTAATATACATTATAATAGTGAAAACGTGGGCAAAATAGGGTAAGCTTGAGGTGTATAACTTCGTTCTACTAGTATTATACACAAAAAACCGAACATATATAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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