SE3530570

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6788
  • Mimulus guttatus
  • SE3530570
  • hAT
  • Hat9
  • scaffold_14:552177-552682
  • AATAGGGG
  • CAGGGCCGGTTCTGAGGGGAGGC

Secondary structure and sequence

TSD    TIR
5'



3' 
AATAGGGG        G       -----   A   GAAG       TCGCCTA -    - CC -      TGTAAAAATTTAGGGCCCCAAAATTTTTTTTATTCCCTTTATATATTAGTATTTATTTAAAAAAATATATATTATATGTATAATTATTGCGAACTCAATGAATAGATATTGATCAACGATTTTTACTTATTTCTATAATTCCTCTAATCATGGAGCCCCGAATTATAATAGTACATTAGCTATTTATC
        CAGGGCCG TTCTGAG     GGG GGC    TAGGCGG       G GGCC C  G AATTTT                                                                                                                                                                                            
        |||||||| |||||||     ||| |||    |||||||       | |||| |  | ||||||                                                                                                                                                                                            T
        GTCCCGGC AGGACTC     CCC CCG    ATCCGCT       C TCTA C  A CTTTTT                                                                                                                                                                                            
GGGGATAA        A       TAAAA   -   --GG       --CTGAA T    C -- A      ACCCTGGGAAGATGTTAGATGCAATTTTGAGAAAGATTTTTCTACTATTTTAGATACACTTGAGCAAAAATATTCCATATATCGATCTCCGTTCTGATATATAAAGGCCCCCAAGCCCCCGTCGCGGGGGCTAAAAAAAATTGCTATTAAAAGTAGTTCACCCGTGATTTTGTTCACATTTATATCTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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