SE3520572

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6790
  • Mimulus guttatus
  • SE3520572
  • Mutator
  • M9
  • scaffold_10:13743550-13743881
  • AAATTTAAA
  • TTTAAACGGGAAAATTACAGTTTTCATCCTTCAAGTTTGCACTGATTTCACATTTGGTCCTCCATGTTCACAAAAAAAACACATTTGGTCCCTCATGTTCTAGTAATTTAACATTTTTAGTCATTTTCATCAATT

Secondary structure and sequence

TSD    TIR
5'



3'
AAA      --C       T  C      CA                T    T            T  A              A  C           C     C   TAA                      ATC    TATCATTAC   -    --T    -       ATT
   TTTAAA   GGGAAAA TA AGTTTT  TCCTTCAAGTTTGCAC GATT CACATTTGGTCC CC TGTTCACAAAAAAA CA ATTTGGTCCCT ATGTT TAG   TTTAACATTTTTAGTCATTTTC   AATT         TCC GTTA   TTAA GGAAGTG   
   ||||||   ||||||| || ||||||  |||||||||||||||| |||| |||||||||||| || |||||||||||||| || ||||||||||| ||||| |||   ||||||||||||||||||||||   ||||         ||| ||||   |||| |||||||   G
   AAATTT   CCCTTTT AT TCAAAA  AGGAAGTTCAAACGTG TTAA GTGTAAACCAGG GG ATAAGTGTTTTTTT GT TAAACTAGGGA TACAA GTT   AAGTTGTGAAAATCAGTAAAAG   TTAA         AGG CAAT   GATT CCTTCAC   
  C      AAA       T  A      CC                T    T            -  C              -  A           A     A   TTG                      CAA    ---------   A    TCT    G       ACG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End