SE3520574

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6792
  • Mimulus guttatus
  • SE3520574
  • Mutator
  • M3
  • scaffold_12:4082402-4082845
  • TAAGATTAA
  • TAAGATTAAGGGTAAATTACACCCACACCCCTGAGGTATGCTTAAATAATTTTAAGGTCCCTATGGTATCGATAATTACACTCACCCCCCTGAAACGTAGTTAGAAACTCTAACGGGATAATGTATTGGATACATTATTCCGATAGGGTTCTAATGGACTATTACTTTTAGCTAGTGGTGGAGATAACATAGAGTTATGGAGAGTTATGGGGTGA

Secondary structure and sequence

TSD    TIR
5'



3'
    GA   A             CC          G                           A                 C        C             G         C                  CA     C                       AC      CT                T          --------    T   -    T  CAT
 TAA  TTA GGGTAAATTACAC  ACACCCCTGA GTATGCTTAAATAATTTTAAGGTCCCT TGGTATCGATAATTACA TCACCCCC TGAAACGTAGTTA AAACTCTAA GGGATAATGTATTGGATA  TTATT CGATAGGGTTCTAATGGACTATT  TTTTAG  AGTGGTGGAGATAACA AGAGTTATGG        AGAG TAT GGGG GA   
 |||  ||| |||||||||||||  |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||| ||||||||| ||||||||||||||||||  ||||| |||||||||||||||||||||||  ||||||  |||||||||||||||| ||||||||||        |||| ||| |||| ||    
 ATT  AAT CCCATTTAATGTG  TGTGGGGACT CATACGAATTTATTGAAATTTCAGGGA ACCATAGCTATTAATGT AGTGGGGG ACTTTGCATCAAT TTTGAGATT CCCTATTACGTAACCTAT  AGTAA GCTATCTCAAGATTGCCTGATAA  AAAGTC  TTACCACCTCTGTTGT TTTTAATACC        TCTT ATA CCCC CT   
A   AG   -             AA          A                           C                 A        A             A         A                  TC     T                       CC      CT                T          CACTAAAT    T   A    -  CGG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End