SE3520576

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6794
  • Mimulus guttatus
  • SE3520576
  • Mutator
  • M2
  • scaffold_11:10227426-10227883
  • TATAATTTA
  • TAGGGTAAATTACAGC

Secondary structure and sequence

TSD    TIR
5'



3'
TATAATT             A  AGCC   C                   C      AAAAA     ----   A   C    A         C    AAAAAATAAAAAA  C  C  T          CAT            TGG     TGTAGATTATGTGGAATATTCTCCAGTTTGTACCTGTTTTACCCCATCCGAGCTCCACATTATGAAACAAGATGATCATAACGT
       TAGGGTAAATTAC GC    CCC TGAGGTAAGGTCAAATTAC GAGAAA     ACCCT    GTT GGG AATT CAACCACCT TCAA             TC TA AC TTCACCCTTG   TGTCAAATTTAG   AATCT                                                                                    
       ||||||||||||| ||    ||| ||||||||||||||||||| ||||||     |||||    ||| ||| |||| ||||||||| ||||             || || || ||||||||||   ||||||||||||   |||||                                                                                     
       ATCCCATTTAATG CG    GGG ACTCCATTCCAGTTTAATG CTTTTT     TGGGG    CAA CCT TTAA GTTGGTGGG AGTT             AG AT TG AGGTGGGAAT   ACAGTTTAAGTT   TATAC                                                                                    
ATTTAAT             C  -GTA   T                   -      -----     AGAA   A   A    C         A    ---GATACTTAGA  A  A  C          ACC            --G     CTTATAAGAGATCAAACATGAGCAAAACACATTTGTACGTCAAAGACTACGTGGTGCTAGACTATATATGTTCGGTTATCTGTG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End