SE3520577

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6795
  • Mimulus guttatus
  • SE3520577
  • Mutator
  • M3
  • scaffold_6:4315646-4316088
  • TTAATTTTA
  • AGGGTAAATTACACCCACACCCCTGTGGTATGCTTAAATAATTTTAAGGTCCCTATGGTATCGATAATTACACTCATCGCCTGAAACGTAGTTAGAAACTCTAACGGGATAATGCATTGGATACATTATTCCGATAGAGTTCTAATGGACTATTACTTTTAGCTAGTGGTGGAGATAAGATAGAGTTATGGGGAGTTATGGGGTGA

Secondary structure and sequence

TSD    TIR
5'



3'
TTAATTTT                         T                        C   A                       G   -            G       AAC                   A     C                       AC      CT              G T           -      --------     T  CAT
        AGGGTAAATTACACCCACACCCCTG GGTATGCTTAAATAATTTTAAGGT CCT TGGTATCGATAATTACACTCATC CCT GAAACGTAGTTA AAACTCT   GGGATAATGCATTGGATAC TTATT CGATAGAGTTCTAATGGACTATT  TTTTAG  AGTGGTGGAGATAA A AGAGTTATGGG GAGTTA        TGGGG GA   
        ||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||| |||||||||||| |||||||   ||||||||||||||||||| ||||| |||||||||||||||||||||||  ||||||  |||||||||||||| | ||||||||||| ||||||        ||||| ||    
        TCCCATTTAATGTGGGTGTGGGGAC CCATACGAATTTATTGAAATTCCA GGA ACCATAGCTATTAATGTGAGTGG GGA CTTTGCATCAAT TTTGAGA   CCCTATTACGTAACCTATG AATAA GCTATCTCAAGATTGCCTGATAA  AAAGTC  TCACCACCTCTGTT T TCTCAATACCC CTTAAT        ACCCC CT   
ATTTTAAT                         T                        A   C                       G   A            A       GTA                   C     T                       CC      CT              G T           A      TCTTTATA     -  CGG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End