Plant MITE

SE3520578

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6796
Mimulus guttatus
SE3520578
Mutator
M2
scaffold_1:4034497-4034761
TTATTATAA
TATTATAAGGGTAAATTACGGGCACCCCTGAGGCAATGTCAAATTACGAAAAAACCCCTCTTGTTTGGGTAATTACAACTACCCCTCAACTATGTATGTTCTTACG

Secondary structure and sequence

TSD TIR

5'

3'

T   T                 G  --         C  T                   C   T                     -      A        GT       AAAA  C     CTTCG  AGGTA
 TAT ATAAGGGTAAATTACGG CA  CCCCTGAGG AA GTCAAATTACGAAAAAACC CTC TGTTTGGGTAATTACAACTAC CCCTCA CTATGTAT  TCTTACG    CC CCCTT     GT     
 ||| ||||||||||||||||| ||  ||||||||| || ||||||||||||||||||| ||| ||||||||||||||||||||| |||||| ||||||||  |||||||    || |||||     ||     A
 ATA TATTCCCGTTTAATGCT GT  GGGGATTCC TT CAGTTTAATGCTTTTTTGG GAG ACAAACCCATTAATGTTGGTG GGGAGT GATACATA  GGAATGT    GG GGGAA     CA     
A   T                 G  TG         A  C                   A   T                     A      A        AC       -GCA  T     TGTAA  GTTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520578

TTATTATAAGGGTAAATTACGGGCACCCCTGAGGCAATGTCAAATTACGAAAAAACCCCTCTTGTTTGGGTAATTACAACTACCCCTCAACTATGTATGTTCTTACGAAAACCCCCCTTCTTCGGTAGGTAAATTTGACAATGTAAGGGTGGACGTGTAAGGCAATACATAGATGAGGGAGTGGTTGTAATTACCCAAACATGAGAGGTTTTTTCGTAATTTGACCTTACCTTAGGGGGTTGGTCGTAATTTGCCCTTATTATAA

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