Plant MITE

SE3520580

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6798
Mimulus guttatus
SE3520580
Mutator
M1
scaffold_7:8975196-8975426
CATAGAACT
TGGAGTTTATTGCAATTAATACCCGTGTTATAACGAATTGCTGAAAAAC

Secondary structure and sequence

TSD TIR

5'

3'

CATAGAAC   A              A     --        AC               TACCTCGTGTT                CT                    -----------     GGT
        TGG GTTTATTGCAATTA TACCC  GTGTTATA  GAATTGCTGAAAAAC           ATTTTATTGGCAAAAA  TCCCCTGTGATTTAATTTTT           ACCCC   
        ||| |||||||||||||| |||||  ||||||||  |||||||||||||||           ||||||||||||||||  ||||||||||||||||||||           |||||   T
        ACC CAAATAACGTTAAT ATGGG  CACAATAT  CTTAACGATTTTTTG           TAAAATAACCGTTTTT  GGGGGATACTAAGTTAAAAA           TGGGG   
GTCAAGAT   C              G     AA        AA               ----------T                -T                    AAATCGTGTTT     GGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520580

CATAGAACTGGAGTTTATTGCAATTAATACCCGTGTTATAACGAATTGCTGAAAAACTACCTCGTGTTATTTTATTGGCAAAAACTTCCCCTGTGATTTAATTTTTACCCCGGTTTGGGGGGTTTTGTGCTAAAAAAAATTGAATCATAGGGGGTTTTTTGCCAATAAAATTGTTTTTTAGCAATTCAATATAACACAAGGGTAGTAATTGCAATAAACCCCATAGAACTG

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