SE3520581

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6799
  • Mimulus guttatus
  • SE3520581
  • Mutator
  • M9
  • scaffold_23:133442-133778
  • AAAATTTGA
  • AAATTTGAAGTGAAAATTACAGTTTTCACCCCTTAAGTTTGCACCGATTTCACATTTGGTCCCCTATATTCACAAAAAACACATTTAGTCCCTCATTTTCCAATAATTTAACGTTTTTTGTCATTTCCGTCAATTTACCGT

Secondary structure and sequence

TSD    TIR
5'



3'
  A      GAA T     T         CA   C   A   T   C                   C   A           - A     A         T  C   T              T           C     A C  -CAGT       --TA     AT  AT
   AAATTT   G GAAAA TACAGTTTT  CCC TTA GTT GCA CGATTTCACATTTGGTCCC TAT TTCACAAAAAA C CATTT GTCCCTCAT TT CAA AATTTAACGTTTTT GTCATTTCCGT AATTT C GT     CTGGCAG    AAGTT  TG  
   ||||||   | ||||| |||||||||  ||| ||| ||| ||| ||||||||||||||||||| ||| ||||||||||| | ||||| ||||||||| || ||| |||||||||||||| ||||||||||| ||||| | ||     |||||||    |||||  ||  G
   TTTAAA   C CTTTT ATGTCAAAA  GGG AGT TAA CGT GCTAAAGTGTAAACCAGGG ATA AAGTGTTTTTT G GTAAA CAGGGAGTA AA GTT TTAAGTTGTGAAAA CAGTAAAGGCA TTAAA G CA     GATTGTC    TTCGG  AC  
AAG      -AC -     T         TC   C   G   T   A                   A   C           T A     C         C  A   T              T           A     A C  ATTTT       TTAG     AT  GG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End