Plant MITE

SE3530584

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6802
Mimulus guttatus
SE3530584
hAT
Hat8
scaffold_3:14232692-14233320
CTTGAGAG
CTTGAGAGCAGTGTTCTAAATATCGGTCGT

Secondary structure and sequence

TSD TIR

5'

3'

   GA      T               C  --         TATATCGGCCGCCATATCGGTGGCGGACATAAACCTTTACGATATATGTGTGGCGGTTTTGAAAATCGGTTTTTTGACGGTGAGGCGGTCCGAGGCGGTCTGTGGCGGTCTGTGGCGGGTCAAACCGATATATCGGGTCAAACTTCGAACGATATATCGGAAAAATATTTTTTTTTTTTTTTTATTAGAAGGAAAATAGGGTGTTTATTTTTTATTTTTTTATTTTTTTTAATTCTAATTCATTATCTCTTTCAATCAAACCCAAAATTACCGA
CTT  GAGCAG GTTCTAAATATCGGT GT  GGCGGCCGA                                                                                                                                                                                                                                                                                  
|||  |||||| ||||||||||||||| ||  |||||||||                                                                                                                                                                                                                                                                                  C
GAG  TTCGTT CAAGATTTATAGCCA TA  CCAGGCTCC                                                                                                                                                                                                                                                                                  
   AG      C               A  GC         GCCAATCCCTGGCGGTGTGCTATTTAGCCGCGCCGTCACTAATTAGCCTCTATATAGCCTTTATTTAGCCAAAAATTTAAATCACATTATATAAAGATTTATAATAAACATTTATGTATTTTTGCATATTTTTTTTAACTTGTACTAAGAGAGGAGTAGCAAATATATAAGATTAGTGTATTGTTTTCAAATTATTATCACTCTATCTCTTACGGCGGCGCCACACACCTAACAAAACACAAAAAAAAAAAGTTCCAGTCCAAGAAGAATGCCC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3530584

CTTGAGAGCAGTGTTCTAAATATCGGTCGTGGCGGCCGATATATCGGCCGCCATATCGGTGGCGGACATAAACCTTTACGATATATGTGTGGCGGTTTTGAAAATCGGTTTTTTGACGGTGAGGCGGTCCGAGGCGGTCTGTGGCGGTCTGTGGCGGGTCAAACCGATATATCGGGTCAAACTTCGAACGATATATCGGAAAAATATTTTTTTTTTTTTTTTATTAGAAGGAAAATAGGGTGTTTATTTTTTATTTTTTTATTTTTTTTAATTCTAATTCATTATCTCTTTCAATCAAACCCAAAATTACCGACCCCGTAAGAAGAACCTGACCTTGAAAAAAAAAAACACAAAACAATCCACACACCGCGGCGGCATTCTCTATCTCACTATTATTAAACTTTTGTTATGTGATTAGAATATATAAACGATGAGGAGAGAATCATGTTCAATTTTTTTTATACGTTTTTATGTATTTACAAATAATATTTAGAAATATATTACACTAAATTTAAAAACCGATTTATTTCCGATATATCTCCGATTAATCACTGCCGCGCCGATTTATCGTGTGGCGGTCCCTAACCGCCTCGGACCCGATAACCGATATTTAGAACCTTGCTTGAGAG

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