SE3540585

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6803
  • Mimulus guttatus
  • SE3540585
  • CACTA
  • Ca1
  • scaffold_8:8907455-8907748
  • TGT
  • CACTAGTAGAAAATTTGCTTATTACTACGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TGT             TTT    A         AA    -            -AAAA     A     TGTACTTTTTACTACGGAACAATTTTGAAGTCGTAGTAAATACTAGGATTTACCGTAGCAAAAAAGTACTTTGTACGGCCA
   CACTAGTAGAAAA   GCTT TTACTACGA  TTTT TTGCTACGGTAA     CCGTA TAAAA                                                                                 
   |||||||||||||   |||| |||||||||  |||| ||||||||||||     ||||| |||||                                                                                  
   GTGATCATCTTTT   CGAA AATGATGCT  GTAA TGGCATCGTTTT     GTTTA AGCAT                                                                                 
TGT             TAC    A         -A    T            CCATA     -     GATTTTTCCGAAAACGATGTGTAAACGATGCTTAAACGGGGCATCGTATATGCCCGCACTGTTCTCGAAACGATGCCATTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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