SE3550586

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6804
  • Mimulus guttatus
  • SE3550586
  • PIF/harbinger
  • To1
  • scaffold_4:17147538-17147806
  • TAA
  • AGGTGGTGTTTGCAAAAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                  -ATTATTTAA     G  -    A TGCGAAATTAAGTTGGTTTTAAGTGCTTATTTCTAAAAGTTGGGGGTGTTTGCAAATTAACTTAAATTGAAAAAGCAAGGTCATGGGTGCT
  AGGTGGTGTTTGCAAAAG          AAGCA TT ATGG T                                                                                           
  ||||||||||||||||||          ||||| || |||| |                                                                                           T
  TCCACCACAAACGTTTTC          ATCTA AT CTCG A                                                                                           
AA                  GAAAATGTTT     -  C    - AAAAAATCGAGTATTAGATCAAAATTCACAAACGTTTTACTTGAAAACGAAAACGAAGAGAATTTTATTCATTAAATTCGATATTAAACAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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