SE3520588

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6806
  • Mimulus guttatus
  • SE3520588
  • Mutator
  • M18
  • scaffold_5:3264021-3264431
  • TTATTAAAA
  • AAGGACAAAATGCACTTCACCCCTACAAATTTCCCATTTTTGCATTTTTCTCCCAAAA

Secondary structure and sequence

TSD    TIR
5'



3'
TTATTAA    A    A  C  T        -AC       CC             T    -     AATTCAG         AAT  -           A       G       T       ATAA  C      --    GG CATTGTGCAACAAAAATAACATTTTAAAGGCGCAATGTGCAAAAAGATAGTGTTTTTTAGGGGTA
       AAGG CAAA TG AC TCACCCCT   AAATTTC  ATTTTTGCATTTT CTCC CAAAA       AAACTGGAT   CC CCCTTCAAAAT TTATTTT GTTGCAC TTGCCCC    GC ATTTTT  TTGT  G                                                                 
       |||| |||| || || ||||||||   |||||||  ||||||||||||| |||| |||||       |||||||||   || ||||||||||| ||||||| ||||||| |||||||    || ||||||  ||||  |                                                                 A
       TTCC GTTT AC TG AGTGGGGG   TTTAAAG  TAAAAGCGTGAAA GGGG GTTTT       TTTGACTTA   GG GGGAAGTTTTA AATAGGA CAACGTG AACGGGG    TT GTTGTA  GTTA  C                                                                 
AAAATTA    C    A  T  T        ATT       AT             T    A     -AAAATA         --C  C           C       A       T       -GTA  -      AA    -- CTAATAAGTAGCCCTAAACTCATAAAACACGTGTAACGGGGAAATATACAATAAAAACAAAGTGC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End