SE3550590

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6808
  • Mimulus guttatus
  • SE3550590
  • PIF/harbinger
  • To12
  • scaffold_14:6050763-6051142
  • TTA
  • AGAGCAACTCCAATGGAGTTATTAAATGGGTTATCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT              --GG  T       -           -------         CTACCATTTTGATGATTCAAATTAGAAATTTTCCACTCCAATGGAGTTATCAAATGAGTTTCTATTTTGATATTTTAATTTTTGGGATGTAAAAATACATCCGGAAGAAATAATGCCAATTAGAAGTTACACAACTT
  AGAGCAACTCCAAT    AG TATTAAA TGGGTTATCAA       AATCATTAA                                                                                                                                         
  ||||||||||||||    || ||||||| |||||||||||       |||||||||                                                                                                                                          
  TCTCGTTGAGGTTG    TT ATAGTTT ATTTAATAGTT       AAACTATAA                                                                                                                                         
AT              GGTG  T       T           TATAAAT         AATATAAATCAAAACTACGGATTAATTTAAATAAACGAGGTTGGTATCTATAGTTTATCAACTATTAATTTTTATTTATTACACTAAAATATAAAATTAATTGTGTACAGTAAAAAATTAACCGATAAATCCACCAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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