Plant MITE

SE3520591

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6809
Mimulus guttatus
SE3520591
Mutator
M9
scaffold_10:17557767-17558099
GAAAAATAA
GGGGAAAATAATGTTTTTGTCCCTCAAGTTTGCACCAATTTCACACTTGGTCCCCCATGTTCAAAAAACCCCTTTGGGTCCCTTATGTTGCAAAAATTCAATATTTTTAGTCATTTCCGTCAATT

Secondary structure and sequence

TSD TIR

5'

3'

GAAAAATAA       A  AT              A       C     T    C      CC       --        C C     G              AA    C         A   A            TC     AAAACTAACGGAATCAAGCGTGTGCC
         GGGGAAA TA  GTTTTTGTCCCTCA GTTTGCA CAATT CACA TTGGTC  CCATGTT  CAAAAAAC C TTTGG TCCCTTATGTTGCA  AATT AATATTTTT GTC TTTCCGTCAATT  CCGTT                          
         ||||||| ||  |||||||||||||| ||||||| ||||| |||| ||||||  |||||||  |||||||| | ||||| ||||||||||||||  |||| ||||||||| ||| ||||||||||||  |||||                           
         CCCCTTT AT  CAAAAGTAGGGAGT CAAACGT GTTAA GTGT AACCAG  GGTACAA  GTTTTTTG G AAACC AGGGAGTACAATGT  TTAA TTGTAAAAA CAG AAAGGCAGTTAA  ATTGC                          
AATAAAAAG       A  GT              A       A     T    A      AC       AT        T T     -              CA    A         C   A            --     AATCAGGCAATCAATTCCGTCACTAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520591

GAAAAATAAGGGGAAAATAATGTTTTTGTCCCTCAAGTTTGCACCAATTTCACACTTGGTCCCCCATGTTCAAAAAACCCCTTTGGGTCCCTTATGTTGCAAAAATTCAATATTTTTAGTCATTTCCGTCAATTTCCCGTTAAAACTAACGGAATCAAGCGTGTGCCCATCACTGCCTTAACTAACGGACTAACGTTAAATTGACGGAAAAGACCAAAAATGTTAAATTACTGTAACATGAGGGACCAAATGTGTTTTTTGTAAACATGGCAGACCAAATGTGTAATTGATGCAAACATGAGGGATGAAAACTGTAATTTCCCCGAAAAATAA

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