SE3520592

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6810
  • Mimulus guttatus
  • SE3520592
  • Mutator
  • M2
  • scaffold_11:14845589-14846059
  • TTAACTATT
  • GGGTAAATTACAACCACCCCTGAGGTATGGTCAAATTAAAAAAAAACCCCTCTTGTTTGGATAATTACATCCACCCCTCAACTATGAATCTTCTTACACATCCACCCTTATGGT

Secondary structure and sequence

TSD    TIR
5'



3'
TTAACTATT                                      AA    AA              A        T     -                        A         A    GTGA    CAACAT    A        TC   A     GC  TAG        C            ------  AA   ACAGTTTCTGATGCACCAAAAATTTGATATATACAAA
         GGGTAAATTACAACCACCCCTGAGGTATGGTCAAATTA  AAAA  CCCCTCTTGTTTGG TAATTACA CCACC CCTCAACTATGAATCTTCTTACAC TCCACCCTT TGGT    AATT      AATC TCTAGATT  GTA AATGT  TC   TTTGTACT GTTTTGTTTGTG      TA  TAT                                     
         ||||||||||||||||||||||||||||||||||||||  ||||  |||||||||||||| |||||||| ||||| |||||||||||||||||||||||| ||||||||| ||||    ||||      |||| ||||||||  ||| |||||  ||   |||||||| ||||||||||||      ||  |||                                      
         CCCATTTAATGTTGGTGGGGACTCCATACCAGTTTGAT  TTTT  GGGGAGAACAAACC ATTAATGT GGTGG GGAGTTGATATTTAGAAGAATGTG GGGTGGGAA GCCA    TTAA      TTAG AGATCTAA  TAT TTATA  AG   AAACATGG CAAAATAGGGTA      AG  ATG                                     
TTATCAATT                                      GC    TG              C        T     A                        C         C    AAGG    ATCACC    A        TA   A     AT  TGA        A            AACTCG  --   TAAAACTTCGTTCTACTAGTATTCTACACAAAAAACC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End