SE3550593

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6811
  • Mimulus guttatus
  • SE3550593
  • PIF/harbinger
  • To22
  • scaffold_5:16258609-16258902
  • TAA
  • AGAGCAACTCCAACAGTTGTGCTATAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA       C    A    T      T  GCTAA     --AG   T  T    ACTTT   TGAAAATTGGAGCTCCAGCAGCTCTTTTATATTATAGACCACATGGCATAATATAAATTTTGGCTTGTCAATTTGAAACACCAAGGGG
  AGAGCAA TCCA CAGT GTGCTA AT     ATTTC    CAA TT TACA     TCC                                                                                        
  ||||||| |||| |||| |||||| ||     |||||    ||| || ||||     |||                                                                                        A
  TCTCGTT AGGT GTCA CACGAT TA     TGAAG    GTT AA ATGT     GTC                                                                                        
AA       A    C    T      T  AATAG     AATA   T  T    -----   ATTTATCACAAAATCGTGTGGTGAAAAAGACTGAGTGAGGTCGTCACCAACAAATATAAGATTTTGTAGTGAACTAAAACGGTAAAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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