SE3550594

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6812
  • Mimulus guttatus
  • SE3550594
  • PIF/harbinger
  • To1
  • scaffold_9:1925344-1925627
  • TAA
  • AGGTGGTGTTTGCAAATG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                  ATTATTTAAAAGCAGAA TT          ATTTAAGTTA     AAG       -T   AAAA   -GG             ----TA     GAAAATGAA    AA   AAAAAGCAGGGTTAGGGGTGCTTTTAAA
  AGGTGGTGTTTGCAAATG                 G  AGTGATTGTG          GTTTT   TGCTTAT  TCT    GTT   GGGTGTTTGCAAA      TTTTG         CTAA  TTG                            
  ||||||||||||||||||                 |  ||||||||||          |||||   |||||||  |||    |||   |||||||||||||      |||||         ||||  |||                             
  TCCACCACAAACGTTTAC                 C  TCACTAATAC          CAAAA   ACGAGTA  AGA    CAA   TCCACAAACGTTT      AAAAC         ACGA  AGA                            
AA                  -----------GAAAAG TT          --------GC     AAA       TT   ----   AAA             TAGTTG     -----GAAA    --   GAATTTTATTAGACGAAATTCGATAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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