SE3530595

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6813
  • Mimulus guttatus
  • SE3530595
  • hAT
  • Hat28
  • scaffold_9:1830302-1830646
  • AATCCAAC
  • CAGGGGCGAGTCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
AATCCAAC   G          ---CCC       -------------------------       ACTCAAGCCCACCCTTAAATTACAATATTTTCCTCATATTATACTTATATATCTATTAAGCTCAATCAATATTTTAATAGGCCACCCAAAATACAAATTGATGCAAAAAAAGTTCTAAT
        CAG GGCGAGTCCA      TTTTGGA                         AGGGTGG                                                                                                                       
        ||| ||||||||||      |||||||                         |||||||                                                                                                                       T
        GTC CCGCTCAGGT      ACTATGT                         GTCCCTG                                                                                                                       
CAACCTAA   A          CCTTAT       CCCACACGAATTTAAAAGCCCACAT       TCGCGGGGGCTTTTTTTCAAATCCTGAAAAAACACTGTTTTAGTTTTTTATCCTTTTTTTTTTATCTTATATTCCCTAAAAAACGTAGTAAAACTTAAAACCCACCTGATTAATTATCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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