SE3520597

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6815
  • Mimulus guttatus
  • SE3520597
  • Mutator
  • M20
  • scaffold_3:13506088-13506583
  • TTTGTCATA
  • TGTCATAAGGGAAAATTGTAGTTTTGGT

Secondary structure and sequence

TSD    TIR
5'



3'
 TT  T  T                      CCTCTA      C  A     AA   --   CTC   C                             CTT      TA    A                  A   -    T       TGA  CGA    TAAACTTGACGCATTTTACTTAAATGGACGCTTGAAAATTTATAAATTCGACATCTAACTTACAATTTGTAGAACGTTAATTATGTGAGAC
   TG CA AAGGGAAAATTGTAGTTTTGGT      TGTTGG CT TTTAG  ATT  GTC   TAA TTGTCATGTTTCAGTTTTACATGCAATAA   TGTAAA  TAGT TTTTTAGTCCTATTTTGC TGA CTTT AATTTTA   CG   CTAA                                                                                           
   || || ||||||||||||||||||||||      |||||| || |||||  |||  |||   ||| |||||||||||||||||||||||||||||   ||||||  |||| |||||||||||||||||| ||| |||| |||||||   ||   ||||                                                                                            
   AC GT TTCCCTTTTAACATTAAAACCA      ACAATC GA GAATC  TAA  CAG   ATT AACAGTATAAAGTTAAAATGTACGTTATT   ATGTTT  ATCA AAAAATCAGGATAAAGTG GCT GAAA TTAAAAT   GC   GTAA                                                                                           
AAT  T  -                      ATATAC      A  G     CC   AT   AAT   C                             AAT      TA    C                  A   T    C       -TG  --A    ATTATTACATGGATTGTTTGAGCATCTTTAAAACAAATATACCTGTGAATTTTTAATATTTACGAGGGGATTACACTAAATGTCTACTAAG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End